• GCAT Team Publishes Methods, Results from Benchmark Tests of Aligners and Variant Callers

    Bio-IT World | GCAT, the Genome Comparison & Analytic Testing platform for benchmarking the performance of basic informatics tools, now has a formal home in the scientific literature with the publication of a paper in Nature Communications.

    Feb 26, 2015

  • 10X Genomics at AGBT

    Bio-IT World | On the first day of the annual Advances in Genome Biology & Technology conference in Marco Island, Florida, 10X Genomics has unveiled its GemCode Platform for recovering long-range information from genomes sequenced on Illumina short-read instruments.

    Feb 25, 2015

  • Allele Frequency Community to Share Data on Population-Wide Incidence of Genetic Variants

    Bio-IT World | This morning, diagnostics and laboratory supply company QIAGEN announced the creation of the Allele Frequency Community, a network of academic centers and commercial groups who will share data on the genetic variants they’ve uncovered during human sequencing studies.

    Feb 24, 2015

  • Foundation Medicine and H3 Biomedicine Sign Oncology Agreement

    Bio-IT World | Foundation Medicine and H3 Biomedicine announced a multi-year collaboration today for the discovery and development of precision medicines in oncology. The collaboration marries Foundation Medicine’s comprehensive genomic knowledgebase of more than 35,000 genomic profiles, FoundationCORE, with H3 Biomedicine’s drug discovery engine and computational biology platform.

    Feb 23, 2015

  • Illumina Introduces Automated Library Preparation

    Bio-IT World News Brief | This morning, DNA sequencing company Illumina released a new product, NeoPrep, to work alongside its line of next-generation sequencers.

    Feb 23, 2015

  • Networks of Genome Data Will Transform Medicine

    MIT Technology Review | 2015's Breakthrough Technologies: A global network of millions of genomes could be medicine's next great advance. Availability: 1-2 years

    Feb 23, 2015

  • Blood Test for Early Cancer Detection

    MIT Technology Review | Among Tech Review's top breakthroughs of 2015: liquid biopsy. Fast DNA-sequencing machines are leading to simple blood tests for cancer. Availability: now

    Feb 22, 2015

  • 23andMe Receives FDA Authorization, Will Not Share Test Results

    Bio-IT World | The FDA has authorized 23andMe to offer its Bloom syndrome carrier status report to customers, CEO Anne Wojcicki said in an email to customers last night, but the company will not be making the reports available.

    Feb 20, 2015

  • Developing Chemistry Apps in the Cloud

    Bio-IT World | Contributed Commentary | The rapid incorporation of touch devices, such as smart phones and tablets, into our personal and business lives increases pressure on software providers to deliver technology via mobile apps. Many tool providers are working to develop mobile versions of existing product that are designed specifically for touch devices. 

    Feb 20, 2015

  • News and Notes from TriCon 2015

    Bio-IT World | The Molecular Medicine Tri-Conference is being held in San Francisco this week, and several updates and new products have emerged already. For live coverage of the event, follow @BioITWorld and the hashtag #TriCon on Twitter.

    Feb 19, 2015

  • Playing the Markets: ClusterK Launches Cloud Scheduler, Open Source GATK Pipeline

    Bio-IT World | Life is too short to wait for GATK to finish. A new company, ClusterK, is releasing its genomics pipeline to illustrate how complex workflows like the Broad Institute’s GATK can be run efficiently—and much faster—on the cloud thanks to grid scheduling and clever use of Amazon's spot markets.  

    Feb 18, 2015

  • Scientists unveil map of epigenome a second genetic code

    Yahoo Finance | Researchers unveiled the map of the "epigenome" in the journal Nature on Wednesday, alongside nearly two dozen related papers. The human genome is the blueprint for building an individual person. The epigenome can be thought of as the cross-outs and underlinings of that blueprint: if someone's genome contains DNA associated with cancer but that DNA is "crossed out" by molecules in the epigenome, for instance, the DNA is unlikely to lead to cancer. As sequencing individuals' genomes to infer the risk of disease becomes more common, it will become all the more important to figure out how the epigenome is influencing that risk as well as other aspects of health.

    Feb 18, 2015

  • BIOVIA Launches Biologics Informatics Program

    Bio-IT World | BIOVIA, the life sciences-oriented subsidiary of Dassault Systèmes formerly known as Accelrys, today introduced a new informatics platform for companies developing biologic drugs, in an announcement at the Molecular Medicine Tri Conference in San Francisco.

    Feb 17, 2015

  • BioNano Teases Out the Genome's Structural Quirks

    Bio-IT World | BioNano’s Irys platform doesn’t sequence DNA. Instead, it’s all about assembly: sorting out exactly where different parts of the genome fit into chromosomes. The company says Irys is the only commercially available system that can handle structural variations in large, complex genomes.

    Feb 16, 2015

  • Maverix Biomics and Elsevier Sign NGS Data Interpretation Agreement

    Bio-IT World News Brief | Maverix Biomics signed a strategic agreement with Elsevier this morning at CHI’s  Molecular Medicine Tri-Conference in San Francisco. The Maverix Analytic Platform will complement Elsevier’s Pathway Studio sample-to-insight workflow and incorporate biological data from Elsevier’s biology journals by providing easy, push-button data analysis.

    Feb 16, 2015

  • 2015 Benjamin Franklin Award Finalists Announced, Voting Open

    Bio-IT World | The 2015 Benjamin Franklin Award for Open Access in the Life Sciences is now open for voting by Bioinformatics.org winners. Voting will close on February 23, and the winner will be announced in April at the Bio-IT World Conference and Expo.

    Feb 12, 2015

  • Invitae Raises $102 Million for 'Universal' Genetic Test

    Bio-IT World News Brief | Invitae, a genetic testing company founded by former Genomic Health CEO Randy Scott, raised $102 million today in an initial public offering.

    Feb 12, 2015

  • Kickstarter Launched for Bea The Film, a Documentary About Hugh Rienhoff’s Daughter

    Bio-IT World | Hugh Rienhoff and his daughter Bea have talked publicly of their clinical odyssey searching for a cause for Bea's ultra-rare condition. Now, Bea is to be the subject of a documentary currently raising funding on Kickstarter.

    Feb 12, 2015

  • New York’s Chief Medical Examiner Seeks to Lead in DNA Research

    New York Times | Dr. Barbara Sampson was named New York's chief medical examiner late last year, becoming the first woman to head the office as it seeks to right itself after high-profile mistakes.

    Feb 10, 2015

  • A $34 Smartphone Gadget That Can Detect HIV in 15 Minutes

    WIRED | When it comes to high-risk, infectious diseases, early detection can make all the difference in getting ill patients some much-needed treatment. In some cases, it may even help stem an outbreak. This becomes incredibly critical in the developing world, where there are fewer resources to go around.

    Feb 10, 2015